I would be happy if everyone could use the GitHub that Ondrej introduced. Actually, the team has been so busy that we can't make time to check this forum. If you can send your feedback to the GitHub, it would be helpful for us. We apologize to everyone who has contributed valuable feedback in this community, but it would help us.
I’m sorry for the late reply. Sorry, I don't have Bruker QTOF (Positive ion mode, Metabolomics) dataset. So I ran an alignment that resembled your data type and settings as closely as possible, but I couldn't reproduce your problem.
Would it be possible for you to also share a dataset that can reproduce your problem?
I'm Kozo, a new member of Hiroshi Tsugawa's lab (the creator of MS-DIAL). I would like to reproduce your problem in my environment to solve the problem. Can you tell me the detailed steps to reproduce problem? (If possible...)