did you analyze your sample by scan mode? or, MRM mode? Although ABF converter should also work for MRM data (https://pubs.acs.org/doi/10.1021/ac400515s), you should ask the developer of ABF converter if it does not work. I will directly email to you to let you know their e-mail address. Also, ABF converter does not work for .d file obtained in chemstation. Thanks,
Because the double charge is recognized in the isotope tracking function independently, it will be generated in the result tables even though you only select [M+H]+ in the adduct type setting.
Here, I changed the meaning of "gap filling by compulsion" option where the peaks will not be filled completely in the alignment gap-filling process. Just untick "Gap filling by compulsion" option of the alignment tab.
Sorry for the late action. Today, hopefully, I fixed the issue, and try to use the alpha-version of the next msdial program here. https://briefcase.riken.jp/public/f9x0QA8newhAn04 Set minimum data point of peak detection tab to 1 for detecting your targeted molecules. Let me know your update,
OK, finally, I did it. Now, MS-DIAL can directory import the wiff2 format file, and the SWATH-MS data was successfully analyzed. I will upload the new version within this week/weekend. Thanks,
Is the file format WIFF2??The current ABF converter does not recognize wiff2 format file. You can use the proteowizard msconvert generating mzml which can be imported in msdial program. However, at this moment, the MS-DIAL program cannot process the SWATH-MS data written by wiff2 (it will be fixed in near future). Therefore, if your data format file is wiff2 instead of wiff, please do the data dependent analysis (information dependent acquisition) to be used in MS-DIAL program at this moment if you wanna use the program. Sorry for your inconvenience.
if possible, could you please write the way for UNIFI data handling here if succeeded? (I was asked by a researcher who wanna process UNIFI data by MS-DIAL. Thanks,
I implemented the export function for SIRIUS ms format file. However, although it is the same situation in msfinder mat format, the current MS-DIAL program does not have the ms1 isotope information in the alignment result table. Therefore, the function is currently available at
Export -> Peaklist export -> Change the export format to .ms. Then, you can obtain .ms file for all spectra for all analysis files imported.
I will upload the new version of ms-dial within next two weeks. Thanks,
Sorry for the late action. Just for my reminder, I've done the functional update for this topic. Thanks! (I will update new version within this week) Hiroshi
Hi, sorry, currently, our RIKEN website is in maintenance and I cannot introduce the respective website. You can actually check the licenses at the webpage. Anyway, the MS-DIAL package is licensed by CC-BY-SA. You can use the program in industry for the commercial use as well with the description of MS-DIAL credit when you distribute the metabolomics/lipidomics results to the customers.
