Hi,
my question refers to the MS-Dial parameters "MS1 factor" and "RT factor". As I understand right, the parameters determine the weighting of mass and retention time (deviations) used for calculating the total score of an feature annotated by the post-identification process.
However, are those parameter also relevant when using an MSP-file for feature annotation,
i.e. do the values for "MS1 factor" and "RT factor" also have impact on the total score calculation of an MSP-file annotated feature?
Can anyone comment on this?
Thanks!
Best regards
FalcoB