IBF convertor from command line June 25, 2020, 04:48:02 PM Hi everyone, Is it possible to run the IBF converter from the command line without the GUI? We'd love to batch convert the timsTOF files as a part of a pipeline. Thanks!Wen Yu Quote Selected
Re: IBF convertor from command line Reply #1 – June 26, 2020, 01:32:45 AM I am sorry that I couldn't help you for the command line. but i would like to know more detail. could you please tell me which instrument did you use and what is the data format you have for IBFconverter? Quote Selected
Re: IBF convertor from command line Reply #2 – June 27, 2020, 06:03:05 AM Hi Sukis,We are using the timsTOF instrument from Bruker. The "*.d" raw files it produces can be converted flawlessly to *.ibf files when we drag-n-drop the file folders onto the IBF converter. We'd just like to run this step in a script from the command line if possible.Thanks! Quote Selected
Re: IBF convertor from command line Reply #3 – June 27, 2020, 07:38:54 AM many thanks. we are using Waters Vion. data is obtained by UNIFI and it is tricky to convert the data. Quote Selected
Re: IBF convertor from command line Reply #4 – August 04, 2020, 11:37:25 PM Hi WenYu and Sukis,I quickly made the command line version.https://briefcase.riken.jp/public/M98cQApnakhAV1cTry to use this first, please?Type like:IbfConverterConsoleApp.exe -i <input folder> -o <output folder> -c <abundance cut off> Where: <input folder> is the folder containing the files to be processed (required) <output folder> is the folder to save results (option). Result files are exported in the same directory for input folder as default. <abundance cut off> is an abundance cut off parameter. (option) Zero is used as defaultThanks,Hiroshi Quote Selected
Re: IBF convertor from command line Reply #5 – August 05, 2020, 10:11:40 AM good! many thanks. Quote Selected
Re: IBF convertor from command line Reply #6 – August 19, 2020, 05:52:42 PM Thanks so much! I'll give it a try. Quote Selected