problems installing on 64bit linux December 21, 2011, 06:17:17 AM Dear all,I'am trying to install XCMS on a 64 bit linux system, but failing to do so. Immediatly after using the biocLite function to download XCMS I get the following warning :Warning in install.packages(pkgs = pkgs, repos = repos, ...) : argument 'lib' is missing: using '/home/rico/R/x86_64-pc-linux-gnu-library/2.11'Warning: dependency âsnowâ is not availablealso installing the dependencies 'faahKO', 'ncdf', 'rgl'After packages are downloaded I get the following error :* installing *source* package âfaahKOâ ...** R** data** inst** preparing package for lazy loadingError in loadNamespace(name) : there is no package called 'xcms'ERROR: lazy loading failed for package 'faahKO'All other packages with the following errors :configure: error: netcdf header netcdf.h not foundERROR: configuration failed for package âncdfâ* removing '/home/rico/R/x86_64-pc-linux-gnu-library/2.11/ncdf'Anyone any ideas? Thanks in advance.Cheers, RicoMy system is :> sessionInfo()R version 2.11.1 (2010-05-31)x86_64-pc-linux-gnulocale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=Cattached base packages:[1] stats graphics grDevices utils datasets methods base Quote Selected
Re: problems installing on 64bit linux Reply #1 – December 21, 2011, 12:32:35 PM Is the netcdf library (libnetcdf-dev) installed ? Quote Selected
Re: problems installing on 64bit linux Reply #2 – December 22, 2011, 02:44:09 AM Hi Ralf,That did it! I thought it was already installed. Thanks.Cheers, RICO Quote Selected
Re: problems installing on 64bit linux Reply #3 – April 02, 2012, 04:19:32 PM Quote from: "Ralf"Is the netcdf library (libnetcdf-dev) installed ? Thanks a bunch for this little tidbit. This did the trick for me too! -Jim Quote Selected
Re: problems installing on 64bit linux Reply #4 – January 15, 2013, 06:05:57 AM Thanks Ralf for the help. I was getting the same error on my 64bit Linux. This is the exact error message: Error in loadNamespace(name) - there is no package called 'xcms', ERROR: lazy loading failed for package 'faahKO'. I even called a computer operator and he could not fix it. Then I searched in Google and reached here and now it is working. Quote Selected