Processing more than two groups September 22, 2011, 11:00:53 AM Hello,XCMS online is really convenient, but if I want to process more than two groups, shall I load them up together,then leading the result to the simca-p for further comparison? Quote Selected
Re: Processing more than two groups Reply #1 – September 22, 2011, 07:30:50 PM We are planning to include multi-class comparison in the next release.In the meantime, there are two ways to work around for comparing e.g. A vs B and A vs. C1. If you just want to pull out a few features: run A vs. B and A vs. C separately. Correct p-values (e.g. Bonferroni).2. run A vs. (B + C). You might want to reduce the minfrac (Alignment) parameter for this, since you will have more samples per class now. Export the result and calculate A vs B and A vs. C statistics using other software. Quote Selected