I´m looking for advice to optime perfomance of peak-picking for my MS data.
I am having some trouble to get all peaks of a chromatogram. I have tried to optimize the parameters to get most of them but i still loss one of the most intense peaks. In contrast, if I change the parameters to get that peak, I loss some of the less intense. I show the commands I am using above and i leave a link to get a file with the chromatograms and the peaks I am finding at the moment and the mzXML file. If it is possible i'd like to get all of the peaks.