Re: FILE_READ_ERROR
Reply #3 –
The solution for this problem is described here.
You have to use the "sortByScanTime" filter to make sure the scans are in the right order in the mzXML file.
Since the msconvertGUI does not seem to support the "sortByScanTime" filter at the moment you have to do the conversion on the command line, using something like
msconvert D:DataMyFile.RAW --filter "sortByScanTime" --mzXML -o D:DataOutput