Re: oh, parameters
Reply #3 –
Some of your questions are R based questions, these I can recommend a good R book. Like S poetry http://http://www.burns-stat.com/pages/spoetry.html (commercial version of R is S). It's quite big but it's good and very helpful.
For the pure xcms stuff, there is now quite a lot of material online distributed through out the old mailing list and other sites. In R you can always ask for help on a function by typing
?xcmsSet
?group
?retcor
#etc
These pages will tell you how the function works and what parameters are needed. Of course there is also the xcms and centWave paper which are good to read after you have played with the software a bit. Finally, a lot of the developers give talks on xcms thought out the year so keep your eyes open for these.
hope these help
Paul