Hi everyone,
I am trying to use MS-DIAL to analyze MS/MS files from a Waters Xevo QQQ instrument, and having difficulties converting the files. I am able to use the software perfectly fine with my Agilent .d files, but the converted .raw files always yield the same error message: No peaks detected. Check polarity settings. Despite the files being converted to .abf, they are not properly being read by MS-DIAL. From what I've seen online and in other posts, I believe the files might be converted incorrectly (they are below 9KB). I have tried converting them to mzML files as well, with the same result. Has anyone else had this issue before?
Hello,
Please try this nice tool to convert to .mzML from Waters and then MSDIAL accepts mzML!
https://github.com/AnP311/Waters2mzML
Thanks,
Biswa