Hi Tsugawa-sensei, I echo Biswa's sentiment and am very thankful for the continual development of tools! As additional points:
MS-DIAL 1. Is it possible to add the option to sepcify only using forward or reverse spectral matching? 2. Is it possible to add a paired mass difference (reactomics) networking function for LC-MS1 data? 3. Is it possible to enable LC-MS1 searching into MS/MS spectra I.e. via an in-source fragmentation algorithm?
MS-FINDER 4. Would it be possible to include RI for exported GC data, especially to be included in exported MSP/ MAT files.
MRMPROBS 5. Is it possible to add the capability of using mzML for SCAN data? I also assume this wouldn't need function ID as per MRM.
MS-LIMA - (thanks to Tada-san for this excellent addition) 6 Is it possible to add the ability to export a list of most abundant (e.g. top 5) ions from a spectra in the MZmine list format? This would also greatly help with integrating GC data into MRMPROBS. 7. For GC data, is it possible to calculate or include a substructure similarity search e.g. via MACCS fingerprints?
Thank you again for all the efforts. Best, Elliott