I used the example file in RMassBankData. The error could not be resolved.
loadList("Compoundlist.csv") Error in loadList("Compoundlist.csv") : Unable to interpret the SMILES-strings for ID(s) 2817 2818 2819 2820 2821 2822 2823 2824 2825 2826 2827 2828 2829 2830 2758 Please check these and load the list again.
when i use the xcmsSet with matchedfilter method, the problems were always existed. i am not sure what happened. Could anyone give help? Thanks! I used the window 7 systerm and 8 core CPU .
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95:229 145:464 195:706 245:921 295:1116 345:1275 395:1391 445:1502 495:1606 545:1706 595:1806 95:226 145:461 195:698 245:910 295:1100 345:1253 395:1368 445:1475 495:1579 545:1679 595:1779 Error: BiocParallel errors element index: 3, 4, 5, 6, 7, 8, ... first error: 'from' cannot be NA, NaN or infinite In addition: Warning message: stop worker failed: 'clear_cluster' receive data failed: reached elapsed time limit
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Attaching package: 'Biobase'
The following object(s) are masked from 'package:xcms':
phenoData, phenoData<-
Warning message: In .local(object, ...) : It looks like this file is in profile mode. centWave can process only centroid mode data !
There were 50 or more warnings (use warnings() to see the first 50) Error in file(file, ifelse(append, "a", "w")) : cannot open the connection Calls: diffreport -> diffreport -> .local -> write.table -> file In addition: Warning messages: 1: In data.row.names(row.names, rowsi, i) : some row.names duplicated: 6,8,88,133,140,147,148,150,185,192,200,272,277,287,292,377,395,401,409,422,428,430,548,566,604,606,628,716,739,835,873,1026,1097,1424,1464,1548,2057 --> row.names NOT used 2: In file(file, ifelse(append, "a", "w")) : cannot open file 'CHD_URINE.tsv': Permission denied Execution halted>
Dear everyone? when i use the xcms to process the data (1.8G) obtained from thermo QE, the error was happened. Could anyone give me a help? thank you
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Attaching package: 'Biobase'
The following object(s) are masked from 'package:xcms':
Hi, I got a problem with the centwave-scanrange. I want to select a range of data using the scantime, however, the centwave only have the scanrange function.
my question is how to get the scanrange. I found that the the scanrange (scan index) is not the scan number.
Hello, I find the the serial number of reporttab(xcms) is difference from that of getPeaklist(CAMERA). Is there code to integrate? the code "cbind" could not solve this problem. Thank you very much!