I just tried setting up my typical R environment on a new computer, i.e. R 2.15 and the current bioconductor-devel versions of XCMS and mzR. I installed with
source("http://bioconductor.org/biocLite.R")
biocLite("mzR")
useDevel()
biocLite("xcms")
The versions look right in the library; however, there seems to be a problem with mzR. When I attempt to load mzR, the first attempt fails with an error message. Note: this is true for both the 64- and 32-bit versions of R.
> library(mzR)
Loading required package: Rcpp
Error : .onLoad failed in loadNamespace() for 'mzR', details:
call: value[[3L]](cond)
error: failed to load module Ramp from package mzR
could not find function "errorOccured"
Error: package/namespace load failed for ‘mzR’
Interestingly, when I try the exact same thing again in the same session, R crashes:
> library(mzR)
Problemsignatur:
Problemereignisname: APPCRASH
Anwendungsname: Rgui.exe
Anwendungsversion: 2.151.59607.0
Anwendungszeitstempel: 4fe47a63
Fehlermodulname: mzR.dll
[...]
Now I tried to download it by hand and reinstall, but I get the same problem:
> install.packages("D:/mzR_1.3.7.zip")
Installiere Paket(e) nach ‘D:/R/win-library/2.15’
(da ‘lib’ nicht spezifiziert)
leite 'repos = NULL' aus dem Dateinamen ab
Paket ‘mzR’ erfolgreich ausgepackt und MD5 Summen abgeglichen
> library(mzR)
Lade nötiges Paket: Rcpp
Error : .onLoad failed in loadNamespace() for 'mzR', details:
call: value[[3L]](cond)
error: failed to load module Ramp from package mzR
konnte Funktion "errorOccured" nicht finden
Fehler: Laden von Paket/Namensraum für ‘mzR’ fehlgeschlagen
>
Right now I'm trying to build from source.