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MZmine / Identify the peak list processed by MZmine using NIST MS Search
I used the MZmine2 software to analyze GC-MS data and NIST MS Search to identify the peak list.
But I found that using the same parameter settings, I got different results.
My parameters are set as follows:
Spectrum RT tolerance: 3%
Max. peaks per spectrum:10
Must have same identities: yes
Min. match factor: 700
Min. reverse match factor: 700
But I am not sure that the settings for Spectrum RT tolerance and Max. peaks per spectrum are correct?
What references can I refer to?
Thank you very much for your help.
Pauline