I'm sorry. I was finally able to read SWATH data successfully with MS-DIAL. I might have made mistakes in my dictionary files. I wrote a dictionary file from contents of Sample Information of PeakView (Explorer in SCIEX OS), and I was able to read it successfully. The feature to create product ion spectra from SWATH data is really helpful. Many thanks!
Many thanks for releasing such a great software. I could successfully load and process my wiff2 files acquired in IDA mode. Then I also tried with wiff2 acquired in SWATH mode, but MS -DIAL does not seem to be able to load MS2 correctly. The shape of MS1 TIC is also sawtooth, so something seems wrong. You mentioned that SWATH-MS has been validated, but has SWATH-MS with WIFF2 also been officially validated to work?
