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CAMERA / Error (segmentation fault) when launching AnnotateDiffreport
For some months, we are getting an error (*** caught segfault ***) when we lauch AnnotateDiffreport on our cluster. We have searched many times but we are desperate. Did anybody ever get this bug when launching annotatediffreport?
Thanks in advance
,Mish
Error we get:
*** caught segfault ***
address (nil), cause 'unknown
Traceback:
1: .Call("BGL_highly_conn_sg", as.integer(nv), as.integer(ne), as.integer(em - 1), as.double(rep(1, ne)), as.integer(sat), as.integer(lldv), as.integer(ldv), PACKAGE = "RBGL")
2: highlyConnSG(g)
3: .local(object, ...)
4: calcPC.hcs(object, ...)
5: calcPC.hcs(object, ...)
6: do.call(method, alist(object, ...))
7: calcPC(object, method = graphMethod, ajc = resMat, psg_list = psg_list)
8: calcPC(object, method = graphMethod, ajc = resMat, psg_list = psg_list)
9: .local(object, cor_eic_th, pval, graphMethod, calcIso, calcCiS, calcCaS, psg_list, xraw, cor_exp_th, ...)
10: groupCorr(xa, cor_eic_th = cor_eic_th, psg_list = psg_list)
11: groupCorr(xa, cor_eic_th = cor_eic_th, psg_list = psg_list)
12: annotateDiffreport(<S4 object of class "xcmsSet">, eicmax = 10, eicwidth = 200, metlin = 0, sortpval = "TRUE", nSlaves = 9, sigma = 6, perfwhm = 0.6, maxcharge = 3, maxiso = 4, minfrac = 0.5, ppm = 5, mzabs = 0.015, quick = "FALSE", cor_eic_th = 0.75, graphMethod = "hcs", pval = 0.05, calcCiS = "TRUE", calcIso = "FALSE", calcCaS = "FALSE", polarity = "negative", multiplier = 3, class1 = "Urines_Controles_A", class2 = "Urines_Controles_B", filebase = "Urines_Controles_A_vs_Urines_Controles_B")
13: do.call(thefunction, listArguments)