1
XCMS Online / Processing IMS data on a short gradient with XCMS
I am trying to process some ion-mobility data that I have acquired on a short gradient.
With the Centwave method, no chromatographic peaks are detected.
With Masspec wavelet, I have this error message:
Error: stop worker failed:
'clear_cluster' receive data failed:
reached elapsed time limit
I first thought it would be a memory problem from my computer but I have check that and it's all right, I have even added more RAM in case.
By consequence, I think it might be coming either from the IMS dimension of the dataset or from the short gradient that I am using.
Anyone would have any experience with XCMS to process IMS dataset, please? Or with a short gradient?
Many thanks in advance,
ML