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XCMS / Consequences of using Centwave for profile mode data
I am trying to reproduce/reprocess a recently published data (data was open to public) and I found out that the author used centwave algorithm to process profile mode data (version of R used 3.2, she used a wrap around function for xcms peak picking so I can't tell which version of xcms she used). I would like to know if there will be any negative effect on the final data table using her method. As far as I know, xcms online will not accept using centwave for profile mode data?
Many thanks for your help
Flo