Hi, we're having some problems analyzing the lipidomics data with the console app. The feature identification for lipids apparently is lacking as compared to the GUI app. Looking thro the source codes, it seems to me that the "Lipidomics" specific functions are not enabled. Am I correct?
For example, the "Target" param is not recognized by the console app. Therefore, Target: Lipidomics has no effect. The support for the solvent type or lipid types seems to be missing as well.
Is ion mobility data supported in the console app? We have data from IMS-QTOF instrument. However the parameters for the Console app don't seem mention the ion mobility or CCS tolerance.
Hi, while most of the arguments have one-to-one mapping from the GUI app, two of the arguments seems to be missing.
1. The "target omics" to specify whether lipidomics or metabolomics is intended. 2. The sample types and other attributes are set to default for every raw files in the folder. Is there a way that we can prepare the sample list separately and attach it to the search? We'd like to specify different sample types and other attributes that are appropriate for the experiment.
