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XCMS / Re: obiwarp error: Found gaps: cut scantime-vector at ...
I have had this problem with Q-Exactive data but not with Exactive data. I am converting to mzXML with ProteoWizard, and have also tried converting the mzXML files to mzdata files but I still get the same error?
Any ideas? Is there a obiwarp setting to allow (tolerate or adjust) gaps in the MS1 chromatogram?
Many thanks in advance.
Karl