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Messages - schymane

2
Publication Committee / Re: New Metabolomics Society Journal - Your Input Needed!
I am not sure "positive feedback" to reviews is really a metric worth aiming for...
I do accept that I could be completely wrong about this idea.

Adding context: positive feedback was received on a detailed, critical review, not a nice&easy one.
Having constructive discussions about scientific work is something worth aiming for.

Is anyone able to address the concerns of Bill and Egon? I just received the same statement yet again...
4
Publication Committee / Re: New Metabolomics Society Journal - Your Input Needed!
Just a quick comment on Jan's wishlist - why double blind review? Why not consider the other way and have open review - to get back to #transparency :-) As a reviewer I appreciate knowing who the work comes from, it is often obvious (but not always and guesswork is not a great idea). If I want to discuss the work with authors beyond the review, I would like the opportunity to do so; I have also considered identifying myself in some reviews, my husband always does and receives very positive feedback. I feel this way is more constructive than double blind, but that's my personal opinion.
7
RMassBank / Welcome to the RMassBank forum - please read before posting
RMassBank is now available on Bioconductor, including all installation information:
http://bioconductor.org/packages/devel/ ... sBank.html
and will be included in the next release of Bioconductor.

For more information about RMassBank please also look here (this will be updated shortly)
http://www.eawag.ch/about/personen/home ... /rmassbank

If you report bugs please report your operating system and the output of sessionInfo() so we can trace versions of dependencies.

If your report contains sensitive information, please email massbank [at] eawag.ch instead (reaches meow and schymane)
8
XCMS / Re: Feed raw input data to XCMS? is now: deprofile.R
Quote
If you are interested in it, we can integrate this centroidization method into XCMS.
I can only agree that it's worth including in XCMS, it made a big difference to our results (e.g. improved ranking of correct molecular formulas) even for a small test set and anyone that has profile information available could thus get greater benefit from their data.