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Messages - Siebolt de Boer

1
XCMS Online / Missing Excel Diffreport in XCMS results
Since about one month I miss the Excel Diffreport in my XCMS Online results.

I only get the TSV Diffreport and the results form this report will not work with

MatLab ! I trieded several ways to transfor TSV into Excel but it will not work !

There where other problems with Java 8 has this something to do with th new

setup ?

Thank you already for your help,

Siebolt de Boer
2
metaXCMS / Problem installing metaXCMS for Windows.
After a few days trying to get metaXCMS working it didn't succeed.

The problem is loading of a mzR ? There is a different version of Rcpp ?

I hope someone can help me with this problem ?

Thank you already for your help.

Best, Wishes, Siebolt.

> library(metaXCMS)
Loading required package: cairoDevice
Loading required package: RGtk2
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following object(s) are masked from ‘package:stats’:

    xtabs

The following object(s) are masked from ‘package:base’:

    anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int, rownames, sapply,
    setdiff, table, tapply, union, unique

Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: xcms
Loading required package: mzR
Loading required package: Rcpp
Error : .onLoad failed in loadNamespace() for 'mzR', details:
  call: value[[3L]](cond)
  error: failed to load module Ramp from package mzR
object '.setDummyField' not found
In addition: Warning messages:
1: package ‘Rcpp’ was built under R version 3.0.1
2: In fun(libname, pkgname) :
  mzR has been built against a different Rcpp version
 than is installed on your system. This might lead to errors
 when loading mzR. If you encounter such issues, please send
 a report, including the output of sessionInfo() to the Bioc
 mailing list -- http://www.bioconductor.org/help/mailing-list.
Error: package ‘mzR’ could not be loaded
> license()

This software is distributed under the terms of the GNU General
Public License, either Version 2, June 1991 or Version 3, June 2007.
The terms of version 2 of the license are in a file called COPYING
which you should have received with
this software and which can be displayed by RShowDoc("COPYING").
Version 3 of the license can be displayed by RShowDoc("GPL-3").

Copies of both versions 2 and 3 of the license can be found
at http://www.R-project.org/Licenses/.

A small number of files (the API header files listed in
R_DOC_DIR/COPYRIGHTS) are distributed under the
LESSER GNU GENERAL PUBLIC LICENSE, version 2.1 or later.
This can be displayed by RShowDoc("LGPL-2.1"),
or obtained at the URI given.
Version 3 of the license can be displayed by RShowDoc("LGPL-3").

'Share and Enjoy.'

> sessionInfo()
R version 2.15.3 (2013-03-01)
Platform: i386-w64-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          LC_TIME=English_United States.1252   

attached base packages:
[1] stats    graphics  grDevices utils    datasets  methods  base   

other attached packages:
[1] Rcpp_0.10.4        Biobase_2.18.0      BiocGenerics_0.4.0  RGtk2_2.20.25      cairoDevice_2.19    BiocInstaller_1.8.3

loaded via a namespace (and not attached):
[1] tools_2.15.3