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CAMERA / Question about annotateDiffreport and annotate function.
My question is about the differences between the "annotateDiffreport" and "annotate" functions.
The following parameters are missing in annotateDiffreport:
-Parameter 'intval' in the groupFWHM step of annotateDiffreport.
annotateDiffreport function: xa <- groupFWHM(xa, perfwhm=perfwhm, sigma=sigma)
annotate function: xa <- groupFWHM(xa, perfwhm=perfwhm, sigma=sigma, intval=intval)
-Parameter 'minfranc' and 'intval' in the findIsotopes step of annotateDiffreport.
annotateDiffreport function: xa <- findIsotopes(xa, maxcharge=maxcharge, maxiso=maxiso, ppm=ppm, mzabs=mzabs)
annotate function: xa <- findIsotopes(xa, maxcharge=maxcharge, maxiso=maxiso, ppm=ppm, mzabs=mzabs, intval=intval, minfrac=minfrac)
Is it normal that these parameters are missing in the annotateDiffreport? These parameters i guess, must affect a lot the results?
Thnak you very much by advance,
Bests regards,
Misharl.