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Hello,
I would have a question which is very related to the one already asked here.
I can manage to plot EICs from grouped xcmsSet objects with something like the code below.
xeic.raw <- getEIC(test, rt = "raw", groupidx=1:4, sampleidx=4)
plot(xeic.raw, test, groupidx=1)
However, I was wondering if this is also possible for XCMS objects before they have been grouped. I would also like to check the performance of the peak integration.
Would be great if someone could help out with that.
Anyway thank you a lot for your time and efforts.
Yasin
In case anybody ever has the same problem:
Peaks_of_all_samples_for_one_found_feature <- getEIC(xcmsSet_object, groupidx = 1183) #in this case the extracted feature is 1183
plot(Leucine, x) #this is the plot.xcmsEIC however, apparently the "xcmsEIC"-part must not be used for that command