Hello everyone,
I used the MZmine2 software to analyze GC-MS data and NIST MS Search to identify the peak list.
But I found that using the same parameter settings, I got different results.
My parameters are set as follows:
Spectrum RT tolerance: 3%
Max. peaks per spectrum:10
Must have same identities: yes
Min. match factor: 700
Min. reverse match factor: 700
But I am not sure that the settings for Spectrum RT tolerance and Max. peaks per spectrum are correct?
What references can I refer to?
Thank you very much for your help.
Pauline
Hi Pauline,
sorry I am not a MZmine2 user and can't answer your question. Does anyone from the community can help on this question?
Thanks
Elena