Metabolomics Society Forum

Software => MS-DIAL => Topic started by: Andrea on August 06, 2020, 07:36:25 AM

Title: MSFINDER tool "MSP TO SEPARATED MSP files" not working
Post by: Andrea on August 06, 2020, 07:36:25 AM
Dear all,
I need to convert the msp file (containing the representative spectra of my alignment results exported from MSDIAL) in separated msp files. I then want to import these files in MSFINDER for a batch job.
When using the MSFINDER tool to do this, the program crashes before finishing the job. This does not happen if I use the "mgf to separated msp". Representative spectra exported as mgf lose most of the important feature's metadata though, therefore I'd rather export my representative spectra in msp.
Does anyone know how to solve this problem? Alternatively, do you know another way to separate the msp file?

Thanks a lot in advance for your help,
Andrea
Title: Re: MSFINDER tool "MSP TO SEPARATED MSP files" not working
Post by: Hiroshi Tsugawa on August 13, 2020, 11:46:42 PM
Please send me your MSP, I will check the program ASAP.
Thanks,

Hiroshi
Title: Re: MSFINDER tool "MSP TO SEPARATED MSP files" not working
Post by: Hiroshi Tsugawa on August 19, 2020, 12:31:47 AM
Hi Andrea,

thank you for sending an example file to me.
I fixed the bug, and please try to use the following development version of msfinder.
https://briefcase.riken.jp/public/59RcQA5n2whAVWM

Hiroshi
Title: Re: MSFINDER tool "MSP TO SEPARATED MSP files" not working
Post by: Andrea on August 24, 2020, 06:58:52 AM
Hi Andrea,

thank you for sending an example file to me.
I fixed the bug, and please try to use the following development version of msfinder.
https://briefcase.riken.jp/public/59RcQA5n2whAVWM

Hiroshi

Hi Hiroshi,
Now the tool is working well.
Thanks a lot for the work you are doing

Andrea