Metabolomics Society Forum

Software => MS-DIAL => Topic started by: Ondrej on October 09, 2020, 06:41:35 AM

Title: Show ion table
Post by: Ondrej on October 09, 2020, 06:41:35 AM
Hi Hiroshi,
I have a problem with "Show ion table" function.
I am not able to use it in some projects. Let's say I have ~800 peaks spots (Blank+, MS2 acquired+, Suggested+) that I need to review.
When I click on the icon, the progress bar "Progress of preparing alignment spot table viewer" stops at random position and never reaches the end. Sometimes is freezes at ~20%, sometimes at ~80%. I can use the X to close the bar and try again.
HW resources are available.
If I completely rebuild the project, it helps sometimes, but sometimes it freezes again. True for multiple versions of MS-DIAL.
Could you please suggest how to find what is wrong?
Thank you,
O.
Title: Re: Show ion table
Post by: Sergey Girel on October 12, 2020, 05:59:02 AM
Had the same, especially with big ion tables.

Often it helps to cancel ion table building and simply start it again.
Title: Re: Show ion table
Post by: Hiroshi Tsugawa on October 13, 2020, 07:00:15 AM
Hi Sergey and Ondrej:

Could you please evaluate this?
https://briefcase.riken.jp/public/q9RkQA4nMghAP1w
If good, I will upload it on public repository.
Thanks!

Hiroshi
Title: Re: Show ion table
Post by: Hiroshi Tsugawa on October 13, 2020, 09:26:55 PM
Sorry sorry, please evaluate the following version.
https://briefcase.riken.jp/public/U9ocQA8nHYhApXQ

Hiroshi
Title: Re: Show ion table
Post by: Ondrej on October 14, 2020, 06:55:17 AM
Hi Hiroshi,
thank you. It works now.
Tested on two different projects, 25k and 35k peak spots from 350 samples.
The bar grows slowly and then jumps several times till 100%.
Ondrej