Metabolomics Society Forum

Software => MZmine => Topic started by: Xiangchun on July 11, 2021, 07:29:34 AM

Title: Installation of MZmine 2.53 in the Centos linux system
Post by: Xiangchun on July 11, 2021, 07:29:34 AM
Hi MZmine experts,

I'm trying to install MZmine 2.53 in the Linux system, and it's almost done except of the following ERROR when i open the startMZmine-Linux:

"[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.spectraidentification.sumformula.SumFormulaSpectraSearchModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.io.exportscans.ExportScansModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.spectralmatc                           hresults.SpectraIdentificationResultsModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.tools.msmsspectramerge.MsMsSpectra                           MergeModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.DataPointProcessingManager
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.massdetection.DPPMassDetectionModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.identification.sumformulaprediction.DPPSumFormulaPredictionModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.isotopes.deisotoper.DPPIsotopeGrouperModule

(process:90146): dconf-CRITICAL **: 21:54:22.065: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

(process:90146): dconf-CRITICAL **: 21:54:22.065: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

(process:90146): dconf-CRITICAL **: 21:54:22.067: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.
[21:54:27|FINE|io.github.mzmine.main.MZmineCore]: Initializing GUI
[21:55:01|FINEST|io.github.mzmine.gui.impl.DesktopSetup]: Initializing the JavaFX subsystem by creating a JFXPanel instance

(java:90146): dconf-CRITICAL **: 21:55:13.754: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

(java:90146): dconf-CRITICAL **: 21:55:16.749: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

[21:56:05|FINEST|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loading desktop configuration
[21:56:05|FINEST|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loading last projects
[21:56:05|FINEST|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loading modules configuration
[21:56:06|FINEST|io.github.mzmine.parameters.parametertypes.selectors.FeaturesParameter]: Values have been loaded from XML
[21:56:06|INFO|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loaded configuration from file /home/x/xiangchun-ju/.mzmine.conf
[21:56:07|FINEST|io.github.mzmine.parameters.parametertypes.WindowSettingsParameter]: Setting window MZmine main window position to java.awt.Point[x=20,y=43]
[21:56:07|FINEST|io.github.mzmine.parameters.parametertypes.WindowSettingsParameter]: Setting window MZmine main window size to java.awt.Dimension[width=1920,height=1017]
[21:56:07|INFO|io.github.mzmine.main.MZmineCore]: Showing main window
[21:56:08|FINEST|io.github.mzmine.util.InetUtils]: Retrieving data from URL http://mzmine.github.io/version.txt
[21:56:08|FINEST|io.github.mzmine.util.InetUtils]: Retrieved 5 characters from http://mzmine.github.io/version.txt
"

 i thought i should re-install the "dconf", so i download "dconf-devel-0.28.0-3.el8.x86_64.rpm" from "https://centos.pkgs.org/8/okey-x86_64/dconf-devel-0.28.0-3.el8.x86_64.rpm.html" and install it under my user path (I only have a user account.), but the ERROR still comes. i only know very few about the linux system, i tried to goole this issue, but failed finnally. Could anyone help me with this solving this issue? tons of thanks to you!

Best,
Xiangchun