Title: Cannot export aligned GC-MS data for GNPS networking
Post by: NaHj on October 14, 2021, 03:31:59 AM
Post by: NaHj on October 14, 2021, 03:31:59 AM
Hi all,
I have procesed GC-MS data with MS-Dial and now wish to export the data to GNPS to perform feature based molecular networking. The GNPS data export option in MS-Dial (Ver 4.7) is unfortunately not available (see attached image) and the mgf file created using other exporting options does not meet GNPS requirements.
In a previous post in this forum it was mentioned that one had to go to Data vizualization -> molecular spectrum networking after alignment. This however just open a network in the browser with no options for exporting a GNPS compatible mgf file and does not seem to solve the problem.
Suggestions for how to solve this would be most welcomed!
Thanks,
Nanna
http://www.metabolomics-forum.com/index.php?action=dlattach;sa=tmpattach;attach=post_tmp_16482_18a99e099322c9f3ee84ac027b1673f9;topic=0
I have procesed GC-MS data with MS-Dial and now wish to export the data to GNPS to perform feature based molecular networking. The GNPS data export option in MS-Dial (Ver 4.7) is unfortunately not available (see attached image) and the mgf file created using other exporting options does not meet GNPS requirements.
In a previous post in this forum it was mentioned that one had to go to Data vizualization -> molecular spectrum networking after alignment. This however just open a network in the browser with no options for exporting a GNPS compatible mgf file and does not seem to solve the problem.
Suggestions for how to solve this would be most welcomed!
Thanks,
Nanna
http://www.metabolomics-forum.com/index.php?action=dlattach;sa=tmpattach;attach=post_tmp_16482_18a99e099322c9f3ee84ac027b1673f9;topic=0
Title: Re: Cannot export aligned GC-MS data for GNPS networking
Post by: Hiroshi Tsugawa on October 14, 2021, 04:22:27 PM
Post by: Hiroshi Tsugawa on October 14, 2021, 04:22:27 PM
Hi Nanna,
sorry, I did not prepare the export option of gnps for GC-MS project.
I will ask the GNPS developers to know what kind of gnps format is required as the export format.
Hiroshi
sorry, I did not prepare the export option of gnps for GC-MS project.
I will ask the GNPS developers to know what kind of gnps format is required as the export format.
Hiroshi
Title: Re: Cannot export aligned GC-MS data for GNPS networking
Post by: NaHj on October 18, 2021, 03:13:09 AM
Post by: NaHj on October 18, 2021, 03:13:09 AM
Thanks Hiroshi! Do you plan to implement GNPS export for GC-MS data in the future?
Nanna.
Nanna.
Title: Re: Cannot export aligned GC-MS data for GNPS networking
Post by: Bambang on January 17, 2022, 05:05:38 AM
Post by: Bambang on January 17, 2022, 05:05:38 AM
I had the same problem. No solution yet.