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Metabolomics Society Forum

Software => R => XCMS => Topic started by: wyuan on December 23, 2011, 10:08:32 AM

Title: Ion trap and orbitrap full scan data in the same file
Post by: wyuan on December 23, 2011, 10:08:32 AM
Dear all,

I tried to run xcms with my file which contains both Ion trap and orbitrap full scan data. It went through and gave me the report. But I wonder which data was included in the report. The "SIEVE" from Thermo can't handle this kind of data.  Can I run it in xcms?  If not, is there any way I can separate the ion trap data from the orbitrap data? Thanks very much.

Wei
Title: Re: Ion trap and orbitrap full scan data in the same file
Post by: Ralf on December 30, 2011, 01:15:03 PM
XCMS will per default read all MS1 scans for profiling, MS2 data will be ignored.
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