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Title: Downstream analysis after CAMERA
Post by: anlin00007 on November 11, 2013, 04:42:58 PM

Hi All,

I am using xcms + camera for metabolomics analysis. After get the "annotated diffreport" file from camera, what should I do next for the database search? How to consider the "isotope" and "adducts" columns that generated by CAMERA?

Thanks

Title: Re: Downstream analysis after CAMERA
Post by: sneumann on November 12, 2013, 12:22:58 AM

Hi,

one idea would be to ignore all higher isotopes, and "subtract" the mass of the adduct
from the m/z. You could use the Rdisop subMolecule() for that.

Yours,
Steffen

Metabolomics Society Forum

Software => R => CAMERA => Topic started by: anlin00007 on November 11, 2013, 04:42:58 PM