plotEICs(anP.group.iso.corr.add, pspec=2, maxlabel=5) results in https://www.dropbox.com/s/4ovljepz1c99q7u/maxlabel5.eps (https://www.dropbox.com/s/4ovljepz1c99q7u/maxlabel5.eps)
and plotEICs(anP.group.iso.corr.add, pspec=2, maxlabel=10) results in https://www.dropbox.com/s/56aiv7ltkczfv ... abel10.eps (https://www.dropbox.com/s/56aiv7ltkczfvcz/maxlabel10.eps)
As you can see the color labels are pointing to different peaks in the two versions of the same spectra.
----
> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets
methods base
other attached packages:
[1] ProbMetab_1.0 rjson_0.2.13
multtest_2.20.0 XML_3.98-1.1 RCurl_1.95-4.1
bitops_1.0-6
[7] hwriter_1.3 RCytoscape_1.14.0
XMLRPC_0.3-0 graph_1.42.0 GeneNet_1.2.9
fdrtool_1.2.12
[13] longitudinal_1.1.9 corpcor_1.6.6
RcppArmadillo_0.4.300.0 CAMERA_1.20.0 igraph_0.7.0
xcms_1.40.0
[19] Biobase_2.24.0 BiocGenerics_0.10.0
mzR_1.10.0 Rcpp_0.11.1
loaded via a namespace (and not attached):
[1] cluster_1.15.2 codetools_0.2-8 Formula_1.1-1
grid_3.1.0 Hmisc_3.14-4 lattice_0.20-29
latticeExtra_0.6-26
[8] MASS_7.3-33 RBGL_1.40.0 RColorBrewer_1.0-5
splines_3.1.0 stats4_3.1.0 survival_2.37-7
tools_3.1.0
Now reported in https://github.com/sneumann/CAMERA/issues/2 (https://github.com/sneumann/CAMERA/issues/2)
Yours,
Steffen