Metabolomics Society Forum

Software => XCMS => R => XCMS - Cookbook => Topic started by: MrStutterZ on October 23, 2014, 06:34:51 AM

Title: Waters raw folder calibration during mzXML conversion?
Post by: MrStutterZ on October 23, 2014, 06:34:51 AM
I have Waters raw folders that I converted to mzXML using Proteowizard. Viewing the files in Insilicos Viewer and later trying to run XCMS, I noticed the scans were separated by the experimental and calibrant peaks. Is there a way to, without using MassLynx (since I have no way to get it), properly calibrate and convert the files?