Just an announcement that the HMDB (version 2.5) is now available in PubChem and will be synched with it on a regular basis. If you have any input on ways we can make the data easier to access and integrate, let me know!
To see all deposited structures: PubChem HMDB Structures (http://www.ncbi.nlm.nih.gov/sites/entrez?db=pcsubstance&cmd=DetailsSearch&term=%22human+metabolome+database%22%5BSourceName%5D&save_search=true).