Metabolomics Society Forum

Archived (read-only) => Data Analysis Interest Group => Topic started by: Jeroen Jansen on November 24, 2011, 05:33:59 AM

Title: Welcome to the Data Analysis Interest Group forum
Post by: Jeroen Jansen on November 24, 2011, 05:33:59 AM
Thank you for visiting this group! This is THE place on the web to discuss data analysis issues relevant for metabolomics. Do you need to find a suitable program for data preprocessing? Are you struggling to find the most suitable data analysis method to answer your experimental question? Any other question regarding number-crunching your metabolomics data?
On the other hand: maybe you invented or found a data analysis method that you think will bring many metabolomics researchers further! In all cases: Do not hesitate to post!
Title: Welcome to the Data Analysis Interest Group forum
Post by: Mark Viant on December 03, 2011, 02:56:27 PM
Great to see this interest group come to life Jeroen. This could be an amazingly helpful resource for the many new scientists coming into the field of metabolomics.
Title: Welcome to the Data Analysis Interest Group forum
Post by: lhdcsu on February 25, 2012, 12:04:03 AM
It is nice to come across this really great forum for exchanging ideas or sharing various kinds of data analysis resources on metabolomics.
Title: Welcome to the Data Analysis Interest Group forum
Post by: Tamara on July 30, 2012, 01:42:07 PM
Hi! I\'m new in metabolomics and I\'m struggling to understand the correct scaling method I should use to answer the correct question. Any advise about where to find information? May be a chapter book...Thanks
Title: Welcome to the Data Analysis Interest Group forum
Post by: scb7589 on August 17, 2012, 08:28:30 AM
Platform independent mass spec processing tools?

I\'m looking into platform-independent software and database tools for processing raw mass spec data, both MS and MS/MS, acquired for metabolomics applications.  I\'ve looked at XCMS, but are there any others out there you could recommend?
Title: Welcome to the Data Analysis Interest Group forum
Post by: Panchagnula on November 05, 2012, 06:25:47 AM
mMass (http://www.mmass.org/) is a good tool to start with in case you are not aware.

We have developed a platform independent tool in house for targeted analysis and use it for our metabolite quantitation using HRMS data files. I would be glad to share it (especially with anyone else who might be interested in testing it out). Email me: v.panchagnula ncl.res.in. Must warn though that it is yet to be tested outside our group.

Venkat Panchagnula


Quote from: scb7589
Platform independent mass spec processing tools?

I\'m looking into platform-independent software and database tools for processing raw mass spec data, both MS and MS/MS, acquired for metabolomics applications.  I\'ve looked at XCMS, but are there any others out there you could recommend?
Title: Welcome to the Data Analysis Interest Group forum
Post by: Thummaruk Suksrichavalit on November 18, 2013, 01:26:00 AM
Nice to meet you, all...
I\'m new, too for metabolomics research based on GC/MS and LC/MS. I try to self-learning, but not completely understand. My problem may the same with some researchers here, which is data analysis. I have no idea after obtaining chromatogram....Hopefully, I will get a good answer from this forum...