mzmine chromatogram deconvolution November 14, 2017, 06:32:54 PM I have been working with mzmine2 but there're some problems.When I use XCMS, one of the 'chromatogram deconvolution' algorithms in mzmine2, I should enter the right value to each parameter(S/N threshold, Wavelet scales). However, it's so difficult to enter the right value because I don't know the criteria for determining the value.Does anyone know the tips about determining parameter value? Quote Selected
Re: mzmine chromatogram deconvolution Reply #1 – November 15, 2017, 01:49:57 AM I think the parameters are named slightly differently in mzmine but here is a tutorial for how to estimate reasonable parameters in xcms: https://rawgit.com/stanstrup/XCMS-course/master/1.%20XCMS.html Quote Selected 1 Likes
Re: mzmine chromatogram deconvolution Reply #2 – November 15, 2017, 04:16:49 AM Thank you so much!! I really appreciate your ppt link!! Quote Selected
Re: mzmine chromatogram deconvolution Reply #3 – October 29, 2022, 08:06:47 AM Quote from: Jan Stanstrup – on November 15, 2017, 01:49:57 AMI think the parameters are named slightly differently in mzmine but here is a tutorial for how to estimate reasonable parameters in xcms: https://rawgit.com/stanstrup/XCMS-course/master/1.%20XCMS.htmlI know it has been a while since you posted this, but any chance this is still available on another active link? - with time RawGit has been discontinued and therefore I cannot access your resource on that link. Thank you Quote Selected