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Topic: xcms does not execute
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Joined: 21 January, 2012
xcms does not execute
September 12, 2018, 03:19:37 AM
I changed my computer and re-installed the whole packages, with the latest R version (3.5.1). Since then, xcms does not work anymore, remaining stacked at the first line
xset<-xcmsSet(method="centWave", peakwidth=c(3,20), snthresh=5, mzdiff=0.01, ppm=3, prefilter=c(5,100000), noise=20000, integrate=1)
a warning message indicate :
Scanning files in directory C:/users/.... (blablabla until the correct file directory).. found 99 files
I also tried with the old R version that I installed and that used to work, but no success either
I'm not a beginner with xcms, and I tried to process my files using another computer in the lab and everything is alright.
I'm using windows 10 with an dell computer equipped with a Xeon processor
any idea of what'sgoing wrong?
Joined: 09 June, 2017
Re: xcms does not execute
October 24, 2018, 02:05:21 AM
Eventually there is something strange going on with the parallel processing. Please add the following line right after you load the xcms package and retry:
with that you disable parallel processing - if it runs without parallel processing we can think of a way to fix parallel processing.
Eurac Research, Bolzano, Italy
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