About the MSMS matching through XCMS online December 05, 2018, 03:42:23 PM Hello,I am a new user of XCMS online and I have some questions about the XCMS data processing. I used the "single function" to process 2 technical replicate MSMS files. The Putative ID's (METLIN) of the analysis log shows that the analysis "Found 178 total, MS^2 spectra to match". However, I couldn't find any information about these matches. I checked the results table as well. Could anyone please let me know where I can find the MSMS matching information in the result? Thank you very much.
Re: About the MSMS matching through XCMS online Reply #1 – December 10, 2018, 09:59:15 AM Hi, I am not a user of XCMS so unfortunately I don't have the answer but maybe you'll find some help on the scripps website: https://xcmsonline.scripps.edu/landing_page.php?pgcontent=documentation or in this paper: https://pdfs.semanticscholar.org/6901/570083ecd16ceaf296de88819f0105d309aa.pdf
Re: About the MSMS matching through XCMS online Reply #2 – December 12, 2018, 03:00:17 AM Hi, I don't seem to be able to change the columns in the results table. I have tried chrome, firefox, IE and edge. Any suggestions? I am trying to look at the MSMS matches, but can't access them as per the regular process.Kind regards,James
Re: About the MSMS matching through XCMS online Reply #3 – December 12, 2018, 01:30:35 PM Hi Elena,Thanks for the suggestions. I will read the paper to see if I can find any information related to my issue. JieQuote from: Elena Legrand on December 10, 2018, 09:59:15 AMHi, I am not a user of XCMS so unfortunately I don't have the answer but maybe you'll find some help on the scripps website: https://xcmsonline.scripps.edu/landing_page.php?pgcontent=documentation or in this paper: https://pdfs.semanticscholar.org/6901/570083ecd16ceaf296de88819f0105d309aa.pdf Quote from: Elena Legrand on December 10, 2018, 09:59:15 AMHi, I am not a user of XCMS so unfortunately I don't have the answer but maybe you'll find some help on the scripps website: https://xcmsonline.scripps.edu/landing_page.php?pgcontent=documentation or in this paper: https://pdfs.semanticscholar.org/6901/570083ecd16ceaf296de88819f0105d309aa.pdf
Re: About the MSMS matching through XCMS online Reply #4 – December 12, 2018, 01:37:11 PM Hi James,I have the same issue as you. I tried to select the MS/MS column in the result table but unfortunately, I couldn't. I guess this is the way to finding the MS/MS matching. Please let me know if you figure out how to do it. Thank you.JieQuote from: jamesabroadbent on December 12, 2018, 03:00:17 AMHi, I don't seem to be able to change the columns in the results table. I have tried chrome, firefox, IE and edge. Any suggestions? I am trying to look at the MSMS matches, but can't access them as per the regular process.Kind regards,James
Topic: About the MSMS matching through XCMS online