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Topic: Identify the peak list processed by MZmine using NIST MS Search (Read 256 times) previous topic - next topic

Identify the peak list processed by MZmine using NIST MS Search

Hello everyone,

I used the MZmine2 software to analyze GC-MS data and NIST MS Search to identify the peak list.
But I found that using the same parameter settings, I got different results.
My parameters are set as follows:
Spectrum RT tolerance: 3%
Max. peaks per spectrum:10
Must have same identities: yes
Min. match factor: 700
Min. reverse match factor: 700

But I am not sure that the settings for Spectrum RT tolerance and Max. peaks per spectrum are correct?
What references can I refer to?

Thank you very much for your help.

Pauline

Re: Identify the peak list processed by MZmine using NIST MS Search

Reply #1
Hi Pauline,
sorry I am not a MZmine2 user and can't answer your question. Does anyone from the community can help on this question?
Thanks
Elena