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Topic: Importing Sciex Data for Building In-house Mass Spectral Library in MSDIAL (Read 32 times) previous topic - next topic

Importing Sciex Data for Building In-house Mass Spectral Library in MSDIAL

Hey Hiroshi,

I planned to import Sciex data from DDA experiments in order to build an own, user- and device-specific MS/MS spectral library for  annotation in MSDIAL.

In this context, I would like to ask you what MSDIAL compatible data format is suggested for this purpose?
Are there variable options, how to extract the MS2 spectra from the raw files? Following this, should the assigned MSMS spectra left as they are or would it be better to eliminate the noise within the spectra before, und if so, how can this be done reliably?

Many thanks for your advice in advance!

Best regards
Falco