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Topic: Running msconvert with R? (Read 76 times) previous topic - next topic

Running msconvert with R?

Hi all,

I am trying to run MSConvert with R, but I got 127 error. What could be the problem?

Code: [Select]
msconvert <- "C:/Program Files (x86)/ProteoWizard/ProteoWizard 3.0.21175.5b6d9afee/msconvert.exe"
file <- "C:/Users/Desktop/Data/QC1.raw"
outfile <- "C:/Users/Desktop/Data"
convert <- paste0(msconvert," --mzXML, -o outfile -v", file)
system(convert)

Thanks for your help.