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Topic: Installation of MZmine 2.53 in the Centos linux system (Read 125 times) previous topic - next topic

Installation of MZmine 2.53 in the Centos linux system

Hi MZmine experts,

I'm trying to install MZmine 2.53 in the Linux system, and it's almost done except of the following ERROR when i open the startMZmine-Linux:

"[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.spectraidentification.sumformula.SumFormulaSpectraSearchModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.io.exportscans.ExportScansModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.spectralmatc                           hresults.SpectraIdentificationResultsModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.tools.msmsspectramerge.MsMsSpectra                           MergeModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.DataPointProcessingManager
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.massdetection.DPPMassDetectionModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.identification.sumformulaprediction.DPPSumFormulaPredictionModule
[21:54:15|FINEST|io.github.mzmine.main.MZmineCore]: Loading module io.github.mzmine.modules.visualization.spectra.simplespectr                           a.datapointprocessing.isotopes.deisotoper.DPPIsotopeGrouperModule

(process:90146): dconf-CRITICAL **: 21:54:22.065: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

(process:90146): dconf-CRITICAL **: 21:54:22.065: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

(process:90146): dconf-CRITICAL **: 21:54:22.067: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.
[21:54:27|FINE|io.github.mzmine.main.MZmineCore]: Initializing GUI
[21:55:01|FINEST|io.github.mzmine.gui.impl.DesktopSetup]: Initializing the JavaFX subsystem by creating a JFXPanel instance

(java:90146): dconf-CRITICAL **: 21:55:13.754: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

(java:90146): dconf-CRITICAL **: 21:55:16.749: unable to create directory '/run/user/7448/dconf': Permission denied.  dconf will not work properly.

[21:56:05|FINEST|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loading desktop configuration
[21:56:05|FINEST|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loading last projects
[21:56:05|FINEST|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loading modules configuration
[21:56:06|FINEST|io.github.mzmine.parameters.parametertypes.selectors.FeaturesParameter]: Values have been loaded from XML
[21:56:06|INFO|io.github.mzmine.main.impl.MZmineConfigurationImpl]: Loaded configuration from file /home/x/xiangchun-ju/.mzmine.conf
[21:56:07|FINEST|io.github.mzmine.parameters.parametertypes.WindowSettingsParameter]: Setting window MZmine main window position to java.awt.Point[x=20,y=43]
[21:56:07|FINEST|io.github.mzmine.parameters.parametertypes.WindowSettingsParameter]: Setting window MZmine main window size to java.awt.Dimension[width=1920,height=1017]
[21:56:07|INFO|io.github.mzmine.main.MZmineCore]: Showing main window
[21:56:08|FINEST|io.github.mzmine.util.InetUtils]: Retrieving data from URL http://mzmine.github.io/version.txt
[21:56:08|FINEST|io.github.mzmine.util.InetUtils]: Retrieved 5 characters from http://mzmine.github.io/version.txt
"

 i thought i should re-install the "dconf", so i download "dconf-devel-0.28.0-3.el8.x86_64.rpm" from "https://centos.pkgs.org/8/okey-x86_64/dconf-devel-0.28.0-3.el8.x86_64.rpm.html" and install it under my user path (I only have a user account.), but the ERROR still comes. i only know very few about the linux system, i tried to goole this issue, but failed finnally. Could anyone help me with this solving this issue? tons of thanks to you!

Best,
Xiangchun