Re: Saving the intermediate xcmsSet objects
Reply #1 –
You can always save R objects with
save(objectname, file = "objectname.RData") which can then be reloaded again into R with
load("objectname.RData"). Note however that I would suggest to switch from the old xcms workflow to the new functionality and objects to analyse data with xcms (http://sneumann.github.io/xcms/articles/xcms.html).