lipidomics/metabolomics

May 03, 2023, 09:48:40 AM

ABF converter error at line 4, position 99.
I am using mzxml file for the conversion. I have previously converted handful of file with ABF converter and never faced any problems. I am only facing errors for a couple of files. I have tried a couple of times still have the same result.
Any suggestions will be appreciated.
Thank you.

Re: lipidomics/metabolomics

Reply #1 – June 18, 2023, 05:29:14 AM

Hi Amin. Suggestions:
- Try msconvert from the proteowizard package instead of ABF converter (convert to mzML, not ABF).
- Check your source file isn't corrupted.