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Topic: Ion trap and orbitrap full scan data in the same file (Read 3771 times) previous topic - next topic

Ion trap and orbitrap full scan data in the same file

Dear all,

I tried to run xcms with my file which contains both Ion trap and orbitrap full scan data. It went through and gave me the report. But I wonder which data was included in the report. The "SIEVE" from Thermo can't handle this kind of data.  Can I run it in xcms?  If not, is there any way I can separate the ion trap data from the orbitrap data? Thanks very much.

Wei

Re: Ion trap and orbitrap full scan data in the same file

Reply #1
XCMS will per default read all MS1 scans for profiling, MS2 data will be ignored.