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Topic: Viewing mzXML files on MAC (Read 7469 times) previous topic - next topic

Viewing mzXML files on MAC

I need to find freeware application to view mzxml files (TICS, XICS, MS) for lcms data from MassLynx (Qtof) on MAC. 

Thanks

 

Re: Viewing mzXML files on MAC

Reply #2
Any of the open source programs will open up the mzXML, including xcms (note not xcms online). There is a list of softwares here:
http://masspec.scripps.edu/metabo_scien ... stools.php
I would also add openMS to this list.  http://open-ms.sourceforge.net/

If you use xcms the command in R would be something like the following:

Code: [Select]
xr<-xcmsRaw("C:/Folder With my data/Name of my file.mzXML")
plotSurf(xr)
plotTIC(xr)
plotEIC(xr, m=c(200.1,200.2)

If you check out the xcms forum and look at the FAQ's there is some example code to do some overlays and other cool plots. :)
~~
H. Paul Benton
Scripps Research Institute
If you have an error with XCMS Online please send me the JOBID and submit an error via the XCMS Online contact page