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Topic: GC-MS settings for XCMS (Read 5333 times) previous topic - next topic

GC-MS settings for XCMS

Hello,

I am trying to use XCMS with MetaXCMS to analyze GC-MS spectra ( from a scanning MS). I was wondering if there are any references/ advise out there for settings to use for GC-MS data for alignment, peak calling, etc as I know they will differ from LCMS.

Thanks a lot

Kelly

Re: GC-MS settings for XCMS

Reply #1 –
There are two predefined GC/MS parameter sets on XCMS Online.
 

Re: GC-MS settings for XCMS

Reply #2 –
Hi kelly,

Did you managed to workout what parameters you are selecting for processing GC-MS data??

I do have the same problem. Could you please help!!!!!