Problems with Job Processing Files

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Problems with Job Processing Files

June 20, 2013, 01:55:45 PM

Hello,

I am new to the XCMS online community and am in need of some assistance. I am using Proteowizard to convert my .d (Agilent) files into the mzXML format. Every time I attempt to process a new job on XCMS online (after the conversion), one of two errors appear. The first reads "Error: Corrupted data file. 1 scans contain m/z values that are not in order". I am not sure how to correct such a thing. And the second error reads, "Error in xcmsRaw(file, profstep = 0) : Could not determine file type". All the uploaded files have the extension .mzXML.zip and it doesn't appear on some of the other files. Is it the "zip" that is causing this error? How do I remove it?

Thank you in advance.

Re: Problems with Job Processing Files

Reply #1 – June 21, 2013, 03:58:54 PM

I need to see the exact error message, what is your job # on XCMS Online ?

Re: Problems with Job Processing Files

Reply #2 – June 26, 2013, 04:52:37 PM

Ralf,

Thank you for your efforts to help me figure out this dilemma. I finally have figured out Proteowizard enough to get a job to process on XCMS online. Thank you.

Bee Lady

Re: Problems with Job Processing Files

Reply #3 – March 17, 2014, 07:54:17 AM

Hi BeeLady,

I'm having the same error msg, what was the settings for ProteoWizard?

Thank

Re: Problems with Job Processing Files

Reply #4 – March 02, 2015, 01:11:31 AM

2. When I selected the default parameters and submitted my job, the job (ID1016980) cannot be processed. An error came out saying "There are duplicated files (filenames) in the datasets your are trying to compare. Please check the files/filenames in the datasets." I'm sure all my .d folders are not duplicated.

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