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Topic: error in R package (Read 5074 times) previous topic - next topic

error in R package

Dear all,

Lately I got an error like this when using R package Version 2.13 ( for installing  bioconductor  xcms package)

> source("http://bioconductor.org/biocLite.R")
Error in value[[3L]](cond) :
  object 'Bioc_Version_Associated_With_R_Version' not found
>    biocLite("xcms")


I have tried to install new version or R: 3.1 but still got the same error. Any one can find a solution for this? I am just a beginner for xcms. Your help is very much appreciated.

Arissa

 

Re: error in R package

Reply #1
What is the output of "version"?
Blog: stanstrup.github.io

Re: error in R package

Reply #2
Quote from: "Arissa"
I have tried to install new version or R: 3.1 but still got the same error.
Arissa

I am a little confused, did you actually upgrade R to version 3.1 or are you considering upgrading? Because you are going to need to for it to work. Since, as stated in the DESCRIPTION file, xcms depends on R 2.14 or higher. I would recommend going with a fairly new version of R for best results.

Cole