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Topic: possible bug in plotEICs (Read 3571 times) previous topic - next topic

possible bug in plotEICs

plotEICs(anP.group.iso.corr.add, pspec=2, maxlabel=5) results in https://www.dropbox.com/s/4ovljepz1c99q7u/maxlabel5.eps

and plotEICs(anP.group.iso.corr.add, pspec=2, maxlabel=10) results in https://www.dropbox.com/s/56aiv7ltkczfv ... abel10.eps

As you can see the color labels are pointing to different peaks in the two versions of the same spectra.

----
> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=German_Germany.1252  LC_CTYPE=German_Germany.1252 
LC_MONETARY=German_Germany.1252 LC_NUMERIC=C                 
[5] LC_TIME=German_Germany.1252 

attached base packages:
[1] parallel  stats    graphics  grDevices utils    datasets
methods  base   

other attached packages:
 [1] ProbMetab_1.0          rjson_0.2.13         
multtest_2.20.0        XML_3.98-1.1            RCurl_1.95-4.1       
bitops_1.0-6         
 [7] hwriter_1.3            RCytoscape_1.14.0     
XMLRPC_0.3-0            graph_1.42.0            GeneNet_1.2.9         
fdrtool_1.2.12       
[13] longitudinal_1.1.9      corpcor_1.6.6         
RcppArmadillo_0.4.300.0 CAMERA_1.20.0          igraph_0.7.0         
xcms_1.40.0         
[19] Biobase_2.24.0          BiocGenerics_0.10.0   
mzR_1.10.0              Rcpp_0.11.1         

loaded via a namespace (and not attached):
 [1] cluster_1.15.2      codetools_0.2-8    Formula_1.1-1     
grid_3.1.0          Hmisc_3.14-4        lattice_0.20-29   
latticeExtra_0.6-26
 [8] MASS_7.3-33        RBGL_1.40.0        RColorBrewer_1.0-5
splines_3.1.0      stats4_3.1.0        survival_2.37-7   
tools_3.1.0

Re: possible bug in plotEICs

Reply #1
Now reported in https://github.com/sneumann/CAMERA/issues/2
Yours,
Steffen
--
IPB Halle                          Mass spectrometry & Bioinformatics
Dr. Steffen Neumann         http://www.IPB-Halle.DE
Weinberg 3 06120 Halle     Tel. +49 (0) 345 5582 - 1470
sneumann(at)IPB-Halle.DE